PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476719
Common NameARALYDRAFT_476719
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 462aa    MW: 49898.5 Da    PI: 9.7379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476719genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05208230223
              EETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
               C+ Cg++F+  ++L+ H+ + H
   476719 208 ACSQCGEVFPKLESLELHQAVrH 230
              6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280207230IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808207235IPR007087Zinc finger, C2H2
SuperFamilySSF563997.96E-25232457No hitNo description
Gene3DG3DSA:3.90.228.101.1E-15234457IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MALLTFLPEN AEAPQKHKPP SSKRKKRENP TDQTQPRKQK PHKPQKPKKE VPQKQPSSWD  60
QIKNLLTCKQ IEGSRVHDPS KNSQVGPSMT THLSPSKLGS SCSSICSFRD VAHGNTRVVH  120
RADHSPDVAN SVAPNSETRL LTRKPGQHGS SSSRSLTSGS TRSNASGSYT SSSTTSFRAM  180
QFRKLSGCYE CHMIVDPSRY PISPRVCACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS  240
GRNIVEIIFK SSWLKKDSPI CQIERILKVQ NTQRTIQRFE DCRDAVKARA LQATRKDARC  300
AADGNELLRF HCTTLTCSLG ARGSSSLCSN LPGCGVCTVI RHGFQGKSGG GAATATANGS  360
GVRTTASSGR ADDLLRCSDD ARRVMLVCRV IAGRVKRVDL PAAEAPSPVE DNSAVGVSTS  420
GGTFDSVAVN AGVYSNLEEL VVYNPRAILP CFVVIYKVLE S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887608.10.0zinc finger family protein
TrEMBLD7KT600.0D7KT60_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.2__1849__AT1G75710.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein